PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J123600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 286aa    MW: 30363 Da    PI: 6.2711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J123600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.72.3e-52622862211
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsevsP 89 
                        ++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+ AL ar +r   ++ + +a+++  +s   ++++++a++l  f++++P
  Pavir.J123600.1.p  62 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCALVARASRtgACKAVTAAVAAAVESAALHVHRFTAVELasFVDLTP 153
                        79***************************************************943444555555444444444777777777789****** PP

               GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfe 177
                        +++f++ +aN aIleaveg   vH++ ++ ++++Q p+L++ LasR+egpp lR+T+ + + s        ++ e+g +L +fA++ +++++
  Pavir.J123600.1.p 154 WHRFGYTAANAAILEAVEGFPVVHVVELGTTHCMQIPTLIDMLASRSEGPPILRLTVADVAPSApppaLDMSYDELGAKLINFARSRNMSMD 245
                        *********************************************************98866667877778899****************** PP

               GRAS 178 fnvl.......vakrledleleeLrvkpgEalaVnlvlqlh 211
                        f+v+        ++ +++l++++L ++  Eal+Vn+++ lh
  Pavir.J123600.1.p 246 FRVVttspadaFTSLVDQLRVQQLVLDGTEALVVNCHMLLH 286
                        ****666655445556677888888888*********9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.11335286IPR005202Transcription factor GRAS
PfamPF035148.1E-5062286IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMQFTHTAPP PPPLHPNGHG GLGLGLFLDV GAPRAARPWP GSFPTPASKI SLGNLNSTSC  60
MEQLLVHCAN AIEANDATLT QQILWVLNNI APPDGDSNQR LTAAFLCALV ARASRTGACK  120
AVTAAVAAAV ESAALHVHRF TAVELASFVD LTPWHRFGYT AANAAILEAV EGFPVVHVVE  180
LGTTHCMQIP TLIDMLASRS EGPPILRLTV ADVAPSAPPP ALDMSYDELG AKLINFARSR  240
NMSMDFRVVT TSPADAFTSL VDQLRVQQLV LDGTEALVVN CHMLLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148176.11e-170GRAS family transcription factor containing protein
SwissprotQ9SN222e-87SCL32_ARATH; Scarecrow-like protein 32
TrEMBLC0PHC41e-172C0PHC4_MAIZE; GRAS transcription factor
STRINGGRMZM2G097456_P011e-171(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-78GRAS family protein